POJ3294:Life Forms(后缀数组)

You may have wondered why most extraterrestrial life forms resemble humans, differing by superficial traits such as height, colour, wrinkles, ears, eyebrows and the like. A few bear no human resemblance; these typically have geometric or amorphous shapes like cubes, oil slicks or clouds of dust.

The answer is given in the 146th episode of Star Trek - The Next Generation, titled The Chase. It turns out that in the vast majority of the quadrant‘s life forms ended up with a large fragment of common DNA.

Given the DNA sequences of several life forms represented as strings of letters, you are to find the longest substring that is shared by more than half of them.

Standard input contains several test cases. Each test case begins with 1 ≤ n ≤ 100, the number of life forms. n lines follow; each contains a string of lower case letters representing the DNA sequence of a life form. Each DNA sequence contains at least one and not more than 1000 letters. A line containing 0 follows the last test case.

For each test case, output the longest string or strings shared by more than half of the life forms. If there are many, output all of them in alphabetical order. If there is no solution with at least one letter, output "?". Leave an empty line between test cases.

#include <iostream>
#include <stdio.h>
#include <string.h>
#include <stack>
#include <queue>
#include <map>
#include <set>
#include <vector>
#include <math.h>
#include <bitset>
#include <algorithm>
#include <climits>
using namespace std;

#define LS 2*i
#define RS 2*i+1
#define UP(i,x,y) for(i=x;i<=y;i++)
#define DOWN(i,x,y) for(i=x;i>=y;i--)
#define MEM(a,x) memset(a,x,sizeof(a))
#define W(a) while(a)
#define gcd(a,b) __gcd(a,b)
#define LL long long
#define N 1000005
#define MOD 1000000007
#define INF 0x3f3f3f3f
#define EXP 1e-8
int wa[N],wb[N],wsf[N],wv[N],sa[N];
int rank[N],height[N],s[N],a[N];
//sa:字典序中排第i位的起始位置在str中第sa[i]
//rank:就是str第i个位置的后缀是在字典序排第几
//height：字典序排i和i-1的后缀的最长公共前缀
int cmp(int *r,int a,int b,int k)
{
    return r[a]==r[b]&&r[a+k]==r[b+k];
}
void getsa(int *r,int *sa,int n,int m)//n要包含末尾添加的0
{
    int i,j,p,*x=wa,*y=wb,*t;
    for(i=0; i<m; i++)  wsf[i]=0;
    for(i=0; i<n; i++)  wsf[x[i]=r[i]]++;
    for(i=1; i<m; i++)  wsf[i]+=wsf[i-1];
    for(i=n-1; i>=0; i--)  sa[--wsf[x[i]]]=i;
    p=1;
    j=1;
    for(; p<n; j*=2,m=p)
    {
        for(p=0,i=n-j; i<n; i++)  y[p++]=i;
        for(i=0; i<n; i++)  if(sa[i]>=j)  y[p++]=sa[i]-j;
        for(i=0; i<n; i++)  wv[i]=x[y[i]];
        for(i=0; i<m; i++)  wsf[i]=0;
        for(i=0; i<n; i++)  wsf[wv[i]]++;
        for(i=1; i<m; i++)  wsf[i]+=wsf[i-1];
        for(i=n-1; i>=0; i--)  sa[--wsf[wv[i]]]=y[i];
        t=x;
        x=y;
        y=t;
        x[sa[0]]=0;
        for(p=1,i=1; i<n; i++)
            x[sa[i]]=cmp(y,sa[i-1],sa[i],j)? p-1:p++;
    }
}
void getheight(int *r,int n)//n不保存最后的0
{
    int i,j,k=0;
    for(i=1; i<=n; i++)  rank[sa[i]]=i;
    for(i=0; i<n; i++)
    {
        if(k)
            k--;
        else
            k=0;
        j=sa[rank[i]-1];
        while(r[i+k]==r[j+k])
            k++;
        height[rank[i]]=k;
    }
}

char str[N];
int len[105],size,ans[N];
bool vis[105];

int check(int mid,int n,int k)
{
    int i,j;
    int size = 0,cnt = 0;
    MEM(vis,false);
    for(i = 1; i<=n; i++)
    {
        if(height[i]>=mid)
        {
            for(j = 1; j<=k; j++)
            {
                //把sa[i-1]或sa[i]所在的字符串给标记，同样的串不重复累加
                if(sa[i]>len[j-1]&&sa[i]<len[j]) cnt+=(vis[j]?0:1),vis[j]=true;
                if(sa[i-1]>len[j-1]&&sa[i-1]<len[j]) cnt+=(vis[j]?0:1),vis[j]=true;
            }
        }
        else
        {
            if(cnt>k/2) ans[++size] = sa[i-1];
            cnt = 0;
            MEM(vis,false);
        }
    }
    if(cnt>k/2) ans[++size] = sa[n];
    if(size)
    {
        ans[0] = size;
        return 1;
    }
    return 0;
}

int main()
{
    int n,k,i,j,flag = 0;
    while(~scanf("%d",&k),k)
    {
        n = 0;
        size = 0;
        for(i = 1; i<=k; i++)
        {
            scanf("%s",str+n);
            for(; str[n]!='\0'; n++)
                s[n] = str[n];
            s[n] = '#'+i;
            len[++size] = n;
            n++;
        }
        s[n-1] = 0;
        getsa(s,sa,n,255);
        getheight(s,n-1);
        int l=1,r=n,mid;
        while(l<=r)
        {
            mid = (l+r)/2;
            if(check(mid,n,k)) l = mid+1;
            else r = mid-1;
        }
        if(flag)
            puts("");
        flag = 1;
        if(l==1)
            puts("?");
        else
        {
            for(i = 1; i<=ans[0]; i++)
            {
                for(j = ans[i]; j<ans[i]+l-1; j++)
                    printf("%c",s[j]);
                puts("");
            }
        }
    }

    return 0;
}