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SOAPdenovo-63mer_v2.0 all -s TongJiN2.config -p 25 -K 63 -d 1 -R -F -o Lily_2 1>ass.log 2>ass.err
-s config file
-o prefix of output file name
-K kmer size
-p number of cpu to use
-d no larger than this value will be deleted
-R resolve repeats by reads
-F fill gaps in scaffold
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原文地址：http://www.cnblogs.com/freemao/p/4393208.html
