1, Creating the fasta sequence dictionary file
java -jar CreatSequenceDictionary.jar R=sequencename.fasta O=sequencename.dict
2,Creating the fasta index file
samtools faidx sequencename.fasta
How to prepare a FASTA file for calling SNP by GATK,布布扣,bubuko.com
How to prepare a FASTA file for calling SNP by GATK
原文地址：http://www.cnblogs.com/freemao/p/3778944.html
